Publications

Simonyan V, Goecks J, and Mazumder R. Bio-compute objects-a step towards evaluation and validation of bio-medical scientific computations. PDA Journal of Pharmaceutical Science and Technology. December 2016;
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, and Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. May 2016; 44(W1)
Yan C, Pattabiraman N, Goecks J, Lam P, Nayak A, Pan Y, Torcivia-Rodriguez J, Voskanian A, Wan Q, Mazumder R. Impact of germline and somatic missense variations on drug binding sites. The Pharmacogenomics Journal. January 2016;
Budd A, Corpas M, Brazas MD, Fuller JC, Goecks J, Mulder NJ, Michaut M, Ouellette BF, Pawlik A, and Blomberg N. A Quick Guide for Building a Successful Bioinformatics Community. PLOS Computational Biology. February 2015; 11(2)
Goecks J, El-Rayes BF, Maithel SK, Khoury HJ, Taylor J, and Rossi MR. Open pipelines for integrated tumor genome profiles reveal differences between pancreatic cancer tumors and cell lines. Cancer Medicine. January 2015; 4(3) :392-403
Goecks J, Eberhard C, Too T, The Galaxy Team, Nekrutenko A, and Taylor J. Web-based Visual Analysis for High-throughput Genomics. BMC Genomics. June 2013; 14(1) :397
Goecks J, Mortimer NT, Mobley JA, Bowersock GJ, Taylor J, and Schlenke TA. Integrative Approach Reveals Composition of Endoparasitoid Wasp Venoms. PLoS ONE. May 2013; 8(5) :e64125
Mortimer NT, Goecks J, Kacsoh BZ, Mobley JA, Bowersock GJ, Taylor J, and Schlenke TA. Parasitoid Wasp Venom SERCA Regulates Drosophila Calcium Levels and Inhibits Cellular Immunity. Proceedings of the National Academy of Science USA. May 2013; 110(23) :9427–9432
Goecks J, Coraor N, The Galaxy Team, Nekrutenko A, and Taylor J. NGS analyses by visualization with Trackster. Nature Biotechnology. November 2012; 30:1036-1039
Goecks J, Li K, Clements D, The Galaxy Team, and Taylor J. The Galaxy Track Browser: Transforming the Genome Browser from Visualization Tool to Analysis Tool. 2011 IEEE Symposium on Biological Data Visualization. October 2011;
Afgan E, Goecks J, Baker D, Coraor N, The Galaxy Team, Nekrutenko A, and Taylor J. Galaxy - a Gateway to Tools in e-Science. Guide to e-Science: Next Generation Scientific Research and Discovery. May 2011;
Goecks J, Nekrutenko A, Taylor J, and The Galaxy Team. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biology. August 2010; 11(8)